Documentation Under Construction

• New 64-bit MacPyMOL allows Mac users to access more than 4 GB of memory

• Volume visualization for unique display of volumetric data and simultaneous visualization of multiple iso-surfaces (see also http://pymol.org/volume)

• Electron density map generation from reflection data

• Stereochemical labeling

• Improved Atom Typing; SYBYL/MOL2 and MacroModel support

• OpenGL Shaders (GLSL) for improved on-screen rendering (cartoons, sticks, surfaces, volumes).

• Dynamic measurements (distances, bond angles and dihedral angles)

• File > Save Molecule now allows saving of multiple files, multi-state PDBs to a single file, and multi-state PDBs to multiple files

• Built using updated and Schrödinger-compatible distribution of Python (v2.7). See Python 2.7 module list.

• PyMOL Web GUI (PWG)
  • import json now works on all platforms

• Several bug fixes

• JyMOL v1.1

• Map reading now works on all platforms

• Transparent ribbons – just set ribbon_transparency, 0.X like other transparency settings.

• Improved State Handling makes operations on multi-state objects easier

• GLSL Shaders now support depth cueing/fogging

• Introducing background gradient. “set bg_gradient”.

• Map resolution read in as Angstroms, not 1/d^2, from MTZ file.

• Elementary volume ray tracing; “set ray_volume”.

• Many bug fixes.

• Known Issues.

• New "ligalign" function for rigid and flexible ligand alignment, conserved residue detection and more